Kuske CR, Hesse CN, Challacombe JF, Cullen D, Herr JR, Mueller RC, Tsang A, Vilgalys R. 2015. Prospects and challenges for fungal metatranscriptomics of complex communities Fungal Ecology 14: 133–137 Link / PDF

Herr JR, Öpik M, Hibbett DS. 2015. Towards the unification of sequence-based classification and sequence-based identification of host-associated microorganisms New Phytologist 205(1): 27-31 Link / PDF / and see companion report from Kennedy & Stajich for some discussion of my work.

Tisserant E, M Malbreil, A Kuo, A Kohler, A Symeonidi, R Balestrini, P Charron, N Duensing, N Frei, V Gianinazzi-Pearson, LB Gilbert, Y Handa, JR Herr, M Hijri, R Koul, M Kawaguchi, F Krajinski, PJ Lammers, FG Masclaux, C Murat, E Morin, S Ndikumana, M Pagni, D Petitpierre, N Requena, P Rosikiewicz, R Riley, K Saito, H San Clemente, H Shapiro, D Van Tuinen, G Bécard, P Bonfante, U Paszkowski, YY Shachar-Hill, GA Tuskan, JPW Young, IR Sanders, B Henrissat, SA Rensing, IV Grigoriev, N Corradi, C Roux, F Martin. (2013) Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis Proceedings of the National Academy of Sciences 110 (50), 20117-20122. Link / PDF

Herr JR, JE Carlson (2013) Traditional Breeding, Genomics-Assisted Breeding, and Biotechnological Modification of Forest Trees and Short Rotation Woody Crops Wood-Based Energy in the Northern Forests , Pages: 69-89 Link / PDF

Scully ED, SM Geib, K Hoover, M Tien, SG Tringe, KW Barry, T Glavina del Rio, M Chovatia, JR Herr, JE Carlson (2013) Metagenomic profiling reveals lignocellulose degrading system in a microbial community associated with a wood-feeding beetle PloS one, 8 (9), e73827 Link / PDF

Herr JR (2012) Cryptococcus: From Human Pathogen To Model Yeast Inoculum 63(2): 22 Link / PDF

Herr, JR (2011) Bioenergy from trees New Phytologist 192 (2), 313-315. Link / PDF

Barakat A, NBM Yassin, JS Park, A Choi, JR Herr, JE Carlson (2011) Comparative and phylogenomic analyses of cinnamoyl-CoA reductase and cinnamoyl-CoA-reductase-like gene family in land plants Plant Science 181 (3), 249-257. Link / PDF

Koide RT, JN Sharda, JR Herr, GM Malcolm (2008) Ectomycorrhizal fungi and the biotrophy–saprotrophy continuum New Phytologist 178 (2), 230-233. Link / PDF.